Index

_

__init__() (fit.KMatrixModel method) (GlobalFitClassGui.CompareSetupDialog method) (GlobalFitClassGui.FitWorker method) (GlobalFitClassGui.GlobalFitPanel method) (GlobalFitClassGui.KineticCanvas method) (GlobalFitClassGui.ModelBuilderDialog method) (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.ParameterIdentifiabilityDialog method) (GlobalFitClassGui.PlotViewerWindow method) (GlobalFitClassGui.SASDASPlotterWindow method) (GlobalFitClassGui.StateNode method) (GlobalFitClassGui.Surface3DWindow method) (GlobalFitClassGui.TraceExplorerWindow method) (GlobalFitClassGui.TransitionEdge method) (maps_from_timescans.AppWindow method) (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.MainApp method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method)

A

abort_fit() (GlobalFitClassGui.GlobalFitPanel method) activate_linking_mode() (GlobalFitClassGui.ModelBuilderDialog method) add_edge() (GlobalFitClassGui.StateNode method) add_state() (fit.KMatrixModel method) (GlobalFitClassGui.KineticCanvas method) add_table_row() (GlobalFitClassGui.ModelBuilderDialog method) add_transition() (fit.KMatrixModel method) analyze_units() (maps_from_timescans.XFELProcessor method)

apply_baseline_correction() (GlobalFitClassGui.GlobalFitPanel method) apply_t0_correction_nonlinear() (in module core_analysis) apply_t0_correction_poly() (in module core_analysis) apply_wl_range() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) apply_x_limits() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) apply_y_scale() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) AppWindow (class in maps_from_timescans) auto_fit_chirp() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method)

B

binning() (in module fit)

build_parameter_list() (fit.KMatrixModel method)

C

cancel_analysis() (GlobalFitClassGui.ParameterIdentifiabilityDialog method) check_units() (maps_from_timescans.AppWindow method) choose_color() (GlobalFitClassGui.CompareSetupDialog method) clear_data() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method) compare_kinetics() (GlobalFitClassGui.GlobalFitPanel method) CompareSetupDialog (class in GlobalFitClassGui) compute_profile_likelihood() (GlobalFitClassGui.GlobalFitPanel method)

convert_dat_to_csv() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) convolved_exp_vectorized() (in module fit) core_analysis module create_card() (UltrafastSpectroscopyAnalyzer.MainApp method) create_connection() (GlobalFitClassGui.KineticCanvas method) crop_kinetics() (in module fit) crop_spectrum() (in module fit)

D

damped_oscillation() (in module fit) delete_selected() (GlobalFitClassGui.KineticCanvas method) dragEnterEvent() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method)

draw_animated_artists() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) dropEvent() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method)

E

enable_point_selection() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) eV_a_nm() (in module core_analysis) eval_varpro_model() (in module fit) eventFilter() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method)

export_figure() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method) export_pdf_report() (GlobalFitClassGui.GlobalFitPanel method) export_spectrum_at_delay() (GlobalFitClassGui.GlobalFitPanel method)

F

finished_error (GlobalFitClassGui.FitWorker attribute) finished_success (GlobalFitClassGui.FitWorker attribute) fit module

fit_t0() (in module core_analysis) fit_t0_points() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) FitWorker (class in GlobalFitClassGui) FLUPSAnalyzer (class in UltrafastSpectroscopyAnalyzer)

G

generate() (maps_from_timescans.AppWindow method) get_base_dir() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) get_coherent_artifact() (in module fit) get_compiled_model() (GlobalFitClassGui.ModelBuilderDialog method) get_concentration_matrix() (fit.KMatrixModel method) get_concentration_matrix_global() (in module fit) get_concentration_matrix_oscillation() (in module fit)

get_concentration_matrix_sequential() (in module fit) get_data() (GlobalFitClassGui.CompareSetupDialog method) get_default_guesses_and_bounds() (fit.KMatrixModel method) get_sequential_populations() (in module fit) GlobalFitClassGui module GlobalFitPanel (class in GlobalFitClassGui)

I

import_energies() (maps_from_timescans.AppWindow method) initUI() (GlobalFitClassGui.ModelBuilderDialog method) (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method) (maps_from_timescans.AppWindow method) (UltrafastSpectroscopyAnalyzer.MainApp method)

itemChange() (GlobalFitClassGui.StateNode method)

K

keyPressEvent() (GlobalFitClassGui.KineticCanvas method)

KineticCanvas (class in GlobalFitClassGui) KMatrixModel (class in fit)

L

launch_flups() (UltrafastSpectroscopyAnalyzer.MainApp method) launch_global() (UltrafastSpectroscopyAnalyzer.MainApp method) launch_tas() (UltrafastSpectroscopyAnalyzer.MainApp method) launch_xfel() (UltrafastSpectroscopyAnalyzer.MainApp method) load_data() (GlobalFitClassGui.GlobalFitPanel method) (in module core_analysis)

load_example_table() (GlobalFitClassGui.ModelBuilderDialog method) load_file() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) load_files() (maps_from_timescans.AppWindow method) load_from_paths() (in module core_analysis) load_npy() (in module fit) load_project() (GlobalFitClassGui.GlobalFitPanel method)

M

MainApp (class in UltrafastSpectroscopyAnalyzer) maps_from_timescans module ModelBuilderDialog (class in GlobalFitClassGui) module core_analysis fit GlobalFitClassGui maps_from_timescans UltrafastSpectroscopyAnalyzer

mousePressEvent() (GlobalFitClassGui.KineticCanvas method)

O

on_am_changed() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) on_click_map() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) on_draw() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) on_mouse_move() (GlobalFitClassGui.GlobalFitPanel method) on_move_map() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) on_sf_changed() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method)

open_github() (UltrafastSpectroscopyAnalyzer.MainApp method) open_global_fit() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) open_identifiability_dialog() (GlobalFitClassGui.GlobalFitPanel method) open_paper_plotter() (GlobalFitClassGui.TraceExplorerWindow method) open_sasdas_plotter() (GlobalFitClassGui.GlobalFitPanel method) open_standalone_plotter() (GlobalFitClassGui.GlobalFitPanel method) open_tool() (UltrafastSpectroscopyAnalyzer.MainApp method) open_visual_model_builder() (GlobalFitClassGui.GlobalFitPanel method)

P

paint() (GlobalFitClassGui.TransitionEdge method) PaperPlotterWindow (class in GlobalFitClassGui) ParameterIdentifiabilityDialog (class in GlobalFitClassGui) parse_spectra_file() (GlobalFitClassGui.SASDASPlotterWindow method) parse_trace_file() (GlobalFitClassGui.PaperPlotterWindow method) plot_3d_surface() (GlobalFitClassGui.GlobalFitPanel method) plot_das_and_more() (GlobalFitClassGui.GlobalFitPanel method) plot_data() (GlobalFitClassGui.Surface3DWindow method) plot_map() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method)

PlotViewerWindow (class in GlobalFitClassGui) process() (maps_from_timescans.XFELProcessor method) progress_update (GlobalFitClassGui.FitWorker attribute) prompt_add_state() (GlobalFitClassGui.ModelBuilderDialog method) prompt_exact_am() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) prompt_exact_sf() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) prompt_exact_wl_max() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) prompt_exact_wl_min() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method)

R

read_csv_file() (in module core_analysis) redo() (GlobalFitClassGui.GlobalFitPanel method) remove_active_dataset() (GlobalFitClassGui.GlobalFitPanel method) remove_pump_fringe() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) remove_table_row() (GlobalFitClassGui.ModelBuilderDialog method) replotted() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method)

reset_all() (GlobalFitClassGui.ModelBuilderDialog method) reset_app() (maps_from_timescans.AppWindow method) run() (GlobalFitClassGui.FitWorker method) run_analysis() (GlobalFitClassGui.ParameterIdentifiabilityDialog method) run_batch_pipeline() (GlobalFitClassGui.GlobalFitPanel method) run_fit_pipeline() (GlobalFitClassGui.GlobalFitPanel method) run_svd() (GlobalFitClassGui.GlobalFitPanel method)

S

SASDASPlotterWindow (class in GlobalFitClassGui) save() (maps_from_timescans.AppWindow method) save_project() (GlobalFitClassGui.GlobalFitPanel method) save_state_to_history() (GlobalFitClassGui.GlobalFitPanel method) save_trace() (GlobalFitClassGui.TraceExplorerWindow method)

setup_paper_style() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method) show_results_summary() (GlobalFitClassGui.GlobalFitPanel method) StateNode (class in GlobalFitClassGui) Surface3DWindow (class in GlobalFitClassGui) switch_analyzer() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method)

T

t0_model() (in module core_analysis) TASAnalyzer (class in UltrafastSpectroscopyAnalyzer) toggle_axes_inputs() (GlobalFitClassGui.SASDASPlotterWindow method)

toggle_corrected_map() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) toggle_y_inputs() (GlobalFitClassGui.PaperPlotterWindow method) TraceExplorerWindow (class in GlobalFitClassGui) TransitionEdge (class in GlobalFitClassGui)

U

UltrafastSpectroscopyAnalyzer module undo() (GlobalFitClassGui.GlobalFitPanel method) update_am_sf() (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) update_fig_size() (GlobalFitClassGui.PaperPlotterWindow method) (GlobalFitClassGui.SASDASPlotterWindow method) update_from_parent() (GlobalFitClassGui.GlobalFitPanel method)

update_n_levels() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) update_plot() (GlobalFitClassGui.TraceExplorerWindow method) update_position() (GlobalFitClassGui.TransitionEdge method) update_small_cuts() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) update_wl_range() (UltrafastSpectroscopyAnalyzer.FLUPSAnalyzer method) (UltrafastSpectroscopyAnalyzer.TASAnalyzer method) use_parent_data() (GlobalFitClassGui.GlobalFitPanel method)

V

validate_counts() (maps_from_timescans.AppWindow method)

X

XFELProcessor (class in maps_from_timescans)